Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add MGnify amplicon tutorial #5292

Draft
wants to merge 4 commits into
base: main
Choose a base branch
from
Draft
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Empty file.
Original file line number Diff line number Diff line change
@@ -0,0 +1,3 @@
---
layout: faq-page
---
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
29 changes: 29 additions & 0 deletions topics/microbiome/tutorials/mgnify-amplicon-v5.0/tutorial.bib
Original file line number Diff line number Diff line change
@@ -0,0 +1,29 @@
@article{Richardson2022,
title = {MGnify: the microbiome sequence data analysis resource in 2023},
volume = {51},
ISSN = {1362-4962},
url = {http://dx.doi.org/10.1093/nar/gkac1080},
DOI = {10.1093/nar/gkac1080},
number = {D1},
journal = {Nucleic Acids Research},
publisher = {Oxford University Press (OUP)},
author = {Richardson, Lorna and Allen, Ben and Baldi, Germana and Beracochea, Martin and Bileschi, Maxwell L and Burdett, Tony and Burgin, Josephine and Caballero-Pérez, Juan and Cochrane, Guy and Colwell, Lucy J and Curtis, Tom and Escobar-Zepeda, Alejandra and Gurbich, Tatiana A and Kale, Varsha and Korobeynikov, Anton and Raj, Shriya and Rogers, Alexander B and Sakharova, Ekaterina and Sanchez, Santiago and Wilkinson, Darren J and Finn, Robert D},
year = {2022},
month = dec,
pages = {D753–D759}
}

@misc{ebi_metagenomics,
author = {{EMBL-EBI | MGnify}},
title = {EBI Metagenomics Portal},
url = {https://www.ebi.ac.uk/metagenomics},
note = {Accessed: 2024-09-09}
}


@misc{ebi_amplicon_pipeline,
author = {{MGnify amplicon pipeline v5.0}},
title = {EBI Metagenomics Pipelines - Version 5},
url = {https://www.ebi.ac.uk/metagenomics/pipelines/5},
note = {Accessed: 2024-09-09}
}
506 changes: 506 additions & 0 deletions topics/microbiome/tutorials/mgnify-amplicon-v5.0/tutorial.md

Large diffs are not rendered by default.

Original file line number Diff line number Diff line change
@@ -0,0 +1,3 @@
---
layout: workflow-list
---
Loading
Loading