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FITS file table graph visualization plugin #19003

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FITS file table graph visualization plugin #19003

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d5a8159
FITS graph viewer plugin integration
francoismg Oct 9, 2024
b687e95
Merge branch 'galaxyproject:dev' into fits-graph-visualization-plugin-pr
francoismg Oct 11, 2024
8b2194e
astrovisjs version change
francoismg Oct 15, 2024
d979b74
astrovisjs version change
francoismg Oct 16, 2024
1710587
astrovisjs version change (bug fix)
francoismg Oct 16, 2024
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1 change: 1 addition & 0 deletions client/gulpfile.js
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Original file line number Diff line number Diff line change
Expand Up @@ -19,6 +19,7 @@ const STATIC_PLUGIN_BUILD_IDS = [
"drawrna",
"editor",
"example",
"fits_graph_viewer",
"fits_image_viewer",
"h5web",
"heatmap/heatmap_default",
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16 changes: 16 additions & 0 deletions config/plugins/visualizations/fits_graph_viewer/config/fits_graph_viewer.xml
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@@ -0,0 +1,16 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE visualization SYSTEM "../../visualization.dtd">
<visualization name="FITS Graph viewer" embeddable="false">
<description>Basic plugin for fits file table visualization</description>
<data_sources>
<data_source>
<model_class>HistoryDatasetAssociation</model_class>
<test type="isinstance" test_attr="datatype" result_type="datatype">binary.FITS</test>
<to_param param_attr="id">dataset_id</to_param>
</data_source>
</data_sources>
<params>
<param type="dataset" var_name_in_template="hda" required="true">dataset_id</param>
</params>
<template>fits_graph_viewer.mako</template>
</visualization>
19 changes: 19 additions & 0 deletions config/plugins/visualizations/fits_graph_viewer/package.json
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{
"name": "fits-graph-visualization",
"version": "1.0.0",
"keywords": [
"galaxy",
"visualization"
],
"main": "index.js",
"license": "AFL-3.0",
"dependencies": {
"webpack": "^5.94.0",
"webpack-cli": "^5.1.4",
"astrovisjs": "0.9.88"
},
"scripts": {
"build": "npx webpack build --config webpack.prod.js --output-path=./static"
}
}

5 changes: 5 additions & 0 deletions config/plugins/visualizations/fits_graph_viewer/src/index.js
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import {init} from 'astrovisjs/dist/astrovis/astrovis';

document.addEventListener('DOMContentLoaded', () => {
init('astrovisdiv', file_url);
});
Binary file added config/plugins/visualizations/fits_graph_viewer/static/logo.png
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36 changes: 36 additions & 0 deletions config/plugins/visualizations/fits_graph_viewer/templates/fits_graph_viewer.mako
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<!DOCTYPE HTML>
<%
import os

root = h.url_for('', qualified=True)

hdadict = trans.security.encode_dict_ids( hda.to_dict() )
file_url = os.path.join(root, 'datasets', hdadict['id'], "display?to_ext="+hda.ext)

app_root = root + '/static/plugins/visualizations/fits_graph_viewer/static/'
%>

<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="UTF-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>FITS Graph Viewer</title>
</head>
<body>

<main>
<section>
<div id="astrovisdiv"></div>
</section>
</main>

<script>
let file_url = '${file_url}';
</script>
<script src="dist/bundle.js"></script>

${h.javascript_link( app_root + 'fits_graph_viewer.js' )}

</body>
</html>
9 changes: 9 additions & 0 deletions config/plugins/visualizations/fits_graph_viewer/webpack.prod.js
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const path = require('path');

module.exports = {
mode: 'production',
entry: './src/index.js',
output: {
filename: 'fits_graph_viewer.js'
},
};
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