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Create version 23.1.4
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mvdbeek committed Jan 4, 2024
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2 changes: 1 addition & 1 deletion lib/galaxy/version.py
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@@ -1,3 +1,3 @@
VERSION_MAJOR = "23.1"
VERSION_MINOR = "4.dev0"
VERSION_MINOR = "4"
VERSION = VERSION_MAJOR + (f".{VERSION_MINOR}" if VERSION_MINOR else "")
25 changes: 22 additions & 3 deletions packages/app/HISTORY.rst
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.. to_doc
-----------
23.1.4.dev0
-----------
-------------------
23.1.4 (2024-01-04)
-------------------


=========
Bug fixes
=========

* Fix workflow index total matches counting by `@davelopez <https://github.com/davelopez>`_ in `#17176 <https://github.com/galaxyproject/galaxy/pull/17176>`_
* Fix `url_for` in tool error reports by `@davelopez <https://github.com/davelopez>`_ in `#17210 <https://github.com/galaxyproject/galaxy/pull/17210>`_

-------------------
23.1.3 (2023-12-01)
Expand Down Expand Up @@ -48,6 +54,7 @@ Enhancements
Bug fixes
=========

*
*
* read job_conf directly from `config_dir` instead of computing it again from `config_file` by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#15596 <https://github.com/galaxyproject/galaxy/pull/15596>`_
* Fix some drs handling issues by `@nuwang <https://github.com/nuwang>`_ in `#15777 <https://github.com/galaxyproject/galaxy/pull/15777>`_
Expand Down Expand Up @@ -104,6 +111,7 @@ Bug fixes
Enhancements
============

*
*
* Empower Users to Select Storage Destination by `@jmchilton <https://github.com/jmchilton>`_ in `#14073 <https://github.com/galaxyproject/galaxy/pull/14073>`_
* External Login Flow: Redirect users if account already exists by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#15019 <https://github.com/galaxyproject/galaxy/pull/15019>`_
Expand Down Expand Up @@ -190,6 +198,7 @@ Other changes
Bug fixes
=========

*
*
*
* Fix upload paramfile handling (for real user setups) by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#16504 <https://github.com/galaxyproject/galaxy/pull/16504>`_
Expand All @@ -205,6 +214,7 @@ Bug fixes
Enhancements
============

*
*
*
* Update pulsar client library to 0.15.5 by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16701 <https://github.com/galaxyproject/galaxy/pull/16701>`_
Expand All @@ -221,6 +231,7 @@ Bug fixes
*
*
*
*
* Skip installing npm/yarn if available, fix conditional dependency parsing, create virtualenv via conda when conda active by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#16403 <https://github.com/galaxyproject/galaxy/pull/16403>`_
* Fix test discovery in vscode by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16413 <https://github.com/galaxyproject/galaxy/pull/16413>`_
* Fixes for (gitlab) error reporting by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#16424 <https://github.com/galaxyproject/galaxy/pull/16424>`_
Expand All @@ -238,6 +249,7 @@ Bug fixes
*
*
*
*
* Fix default when statement evaluation by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16332 <https://github.com/galaxyproject/galaxy/pull/16332>`_
* Redact private role name and description when purging user by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16349 <https://github.com/galaxyproject/galaxy/pull/16349>`_

Expand All @@ -255,6 +267,7 @@ Bug fixes
*
*
*
*
* Bump galaxy-release-util version to 0.1.2 by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16241 <https://github.com/galaxyproject/galaxy/pull/16241>`_

============
Expand All @@ -264,12 +277,14 @@ Enhancements
*
*
*
*
* When importing tool data bundles, use the first loc file for the matching table by `@natefoo <https://github.com/natefoo>`_ in `#16247 <https://github.com/galaxyproject/galaxy/pull/16247>`_

=============
Other changes
=============

*
*
*
* Forward port of slugify username received from oidc by `@nuwang <https://github.com/nuwang>`_ in `#16271 <https://github.com/galaxyproject/galaxy/pull/16271>`_
Expand All @@ -289,6 +304,7 @@ Bug fixes
*
*
*
*
* Fix ``Text File Busy`` errors at the source by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16212 <https://github.com/galaxyproject/galaxy/pull/16212>`_

============
Expand All @@ -301,6 +317,7 @@ Enhancements
*
*
*
*
* Point release deps fixes and docs by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16214 <https://github.com/galaxyproject/galaxy/pull/16214>`_
* Use galaxy-release-util to upload python packages by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16240 <https://github.com/galaxyproject/galaxy/pull/16240>`_

Expand All @@ -320,6 +337,7 @@ Bug fixes
*
*
*
*
* Display DCE in job parameter component, allow rerunning with DCE input by `@mvdbeek <https://github.com/mvdbeek>`_ in `#15744 <https://github.com/galaxyproject/galaxy/pull/15744>`_
* Fix mixed outputs_to_working_directory pulsar destinations by `@mvdbeek <https://github.com/mvdbeek>`_ in `#15927 <https://github.com/galaxyproject/galaxy/pull/15927>`_
* Update Gravity to 1.0.3 by `@natefoo <https://github.com/natefoo>`_ in `#15939 <https://github.com/galaxyproject/galaxy/pull/15939>`_
Expand Down Expand Up @@ -349,6 +367,7 @@ Other changes
*
*
*
*
* Startup fix when tool removed between reboot by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16175 <https://github.com/galaxyproject/galaxy/pull/16175>`_

-------------------
Expand Down
2 changes: 1 addition & 1 deletion packages/app/setup.cfg
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Expand Up @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-app
url = https://github.com/galaxyproject/galaxy
version = 23.1.4.dev0
version = 23.1.4

[options]
include_package_data = True
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8 changes: 4 additions & 4 deletions packages/auth/HISTORY.rst
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Expand Up @@ -3,11 +3,11 @@ History

.. to_doc
-----------
23.1.4.dev0
-----------

-------------------
23.1.4 (2024-01-04)
-------------------

No recorded changes since last release

-------------------
23.1.3 (2023-12-01)
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2 changes: 1 addition & 1 deletion packages/auth/setup.cfg
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Expand Up @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-auth
url = https://github.com/galaxyproject/galaxy
version = 23.1.4.dev0
version = 23.1.4

[options]
include_package_data = True
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13 changes: 9 additions & 4 deletions packages/config/HISTORY.rst
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Expand Up @@ -3,11 +3,11 @@ History

.. to_doc
-----------
23.1.4.dev0
-----------

-------------------
23.1.4 (2024-01-04)
-------------------

No recorded changes since last release

-------------------
23.1.3 (2023-12-01)
Expand Down Expand Up @@ -42,6 +42,7 @@ Enhancements
Bug fixes
=========

*
*
* Fix some drs handling issues by `@nuwang <https://github.com/nuwang>`_ in `#15777 <https://github.com/galaxyproject/galaxy/pull/15777>`_
* Improve container resolver documentation by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16280 <https://github.com/galaxyproject/galaxy/pull/16280>`_
Expand All @@ -53,6 +54,7 @@ Bug fixes
Enhancements
============

*
*
* External Login Flow: Redirect users if account already exists by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#15019 <https://github.com/galaxyproject/galaxy/pull/15019>`_
* Add slack error reporting plugin by `@hexylena <https://github.com/hexylena>`_ in `#15025 <https://github.com/galaxyproject/galaxy/pull/15025>`_
Expand Down Expand Up @@ -97,6 +99,7 @@ No recorded changes since last release
Bug fixes
=========

*
*
*
* Minor bug fix for default mail templates by `@neoformit <https://github.com/neoformit>`_ in `#16362 <https://github.com/galaxyproject/galaxy/pull/16362>`_
Expand Down Expand Up @@ -132,12 +135,14 @@ Bug fixes
*
*
*
*
* Change default watchdog inotify_buffer log level to info by `@mvdbeek <https://github.com/mvdbeek>`_ in `#15967 <https://github.com/galaxyproject/galaxy/pull/15967>`_

============
Enhancements
============

*
*
*
* Add ``ca_certs`` option for sentry client by `@mvdbeek <https://github.com/mvdbeek>`_ in `#15943 <https://github.com/galaxyproject/galaxy/pull/15943>`_
Expand Down
2 changes: 1 addition & 1 deletion packages/config/setup.cfg
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Expand Up @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-config
url = https://github.com/galaxyproject/galaxy
version = 23.1.4.dev0
version = 23.1.4

[options]
include_package_data = True
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23 changes: 20 additions & 3 deletions packages/data/HISTORY.rst
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Expand Up @@ -3,11 +3,22 @@ History

.. to_doc
-----------
23.1.4.dev0
-----------
-------------------
23.1.4 (2024-01-04)
-------------------


=========
Bug fixes
=========

* Fix User.current_galaxy_session by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17232 <https://github.com/galaxyproject/galaxy/pull/17232>`_

=============
Other changes
=============

* Backport #17188: Fix for converter tests by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17231 <https://github.com/galaxyproject/galaxy/pull/17231>`_

-------------------
23.1.3 (2023-12-01)
Expand All @@ -29,6 +40,7 @@ Bug fixes
Bug fixes
=========

*
* Skip change_datatype things if we're not actually changing the extension by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16931 <https://github.com/galaxyproject/galaxy/pull/16931>`_
* Fix copying metadata to copied job outputs by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17007 <https://github.com/galaxyproject/galaxy/pull/17007>`_
* Update tar_to_directory dependency by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17009 <https://github.com/galaxyproject/galaxy/pull/17009>`_
Expand All @@ -52,6 +64,7 @@ Enhancements
Bug fixes
=========

*
*
* Fix bad auto-merge of dev. by `@jmchilton <https://github.com/jmchilton>`_ in `#15386 <https://github.com/galaxyproject/galaxy/pull/15386>`_
* Merge conflicting db migration branches into one by `@jdavcs <https://github.com/jdavcs>`_ in `#15771 <https://github.com/galaxyproject/galaxy/pull/15771>`_
Expand Down Expand Up @@ -83,6 +96,7 @@ Bug fixes
Enhancements
============

*
*
* Empower Users to Select Storage Destination by `@jmchilton <https://github.com/jmchilton>`_ in `#14073 <https://github.com/galaxyproject/galaxy/pull/14073>`_
* Add Storage Dashboard visualizations for histories by `@davelopez <https://github.com/davelopez>`_ in `#14820 <https://github.com/galaxyproject/galaxy/pull/14820>`_
Expand Down Expand Up @@ -142,6 +156,7 @@ Other changes
Bug fixes
=========

*
*
*
* Fix extra files path handling by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16541 <https://github.com/galaxyproject/galaxy/pull/16541>`_
Expand All @@ -159,6 +174,7 @@ Bug fixes
*
*
*
*
* Copy when_expression when copying workflow step by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16377 <https://github.com/galaxyproject/galaxy/pull/16377>`_

-------------------
Expand Down Expand Up @@ -192,6 +208,7 @@ Bug fixes
*
*
*
*
* Display DCE in job parameter component, allow rerunning with DCE input by `@mvdbeek <https://github.com/mvdbeek>`_ in `#15744 <https://github.com/galaxyproject/galaxy/pull/15744>`_
* Fix folder listing via file browser by `@mvdbeek <https://github.com/mvdbeek>`_ in `#15950 <https://github.com/galaxyproject/galaxy/pull/15950>`_
* Fix RO-crate invocation export with complex collections by `@davelopez <https://github.com/davelopez>`_ in `#15971 <https://github.com/galaxyproject/galaxy/pull/15971>`_
Expand Down
2 changes: 1 addition & 1 deletion packages/data/setup.cfg
Original file line number Diff line number Diff line change
Expand Up @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-data
url = https://github.com/galaxyproject/galaxy
version = 23.1.4.dev0
version = 23.1.4

[options]
include_package_data = True
Expand Down
13 changes: 10 additions & 3 deletions packages/files/HISTORY.rst
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Expand Up @@ -3,11 +3,16 @@ History

.. to_doc
-----------
23.1.4.dev0
-----------
-------------------
23.1.4 (2024-01-04)
-------------------


=========
Bug fixes
=========

* Separate collection and non-collection data element by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17236 <https://github.com/galaxyproject/galaxy/pull/17236>`_

-------------------
23.1.3 (2023-12-01)
Expand Down Expand Up @@ -35,6 +40,7 @@ Bug fixes
Bug fixes
=========

*
*
* Fix some drs handling issues by `@nuwang <https://github.com/nuwang>`_ in `#15777 <https://github.com/galaxyproject/galaxy/pull/15777>`_
* Fix filesource file url support by `@nuwang <https://github.com/nuwang>`_ in `#15794 <https://github.com/galaxyproject/galaxy/pull/15794>`_
Expand Down Expand Up @@ -80,6 +86,7 @@ No recorded changes since last release
Bug fixes
=========

*
*
*
* Fix dropbox import to support newer versions by `@nuwang <https://github.com/nuwang>`_ in `#16239 <https://github.com/galaxyproject/galaxy/pull/16239>`_
Expand Down
2 changes: 1 addition & 1 deletion packages/files/setup.cfg
Original file line number Diff line number Diff line change
Expand Up @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-files
url = https://github.com/galaxyproject/galaxy
version = 23.1.4.dev0
version = 23.1.4

[options]
include_package_data = True
Expand Down
10 changes: 6 additions & 4 deletions packages/job_execution/HISTORY.rst
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Expand Up @@ -3,11 +3,11 @@ History

.. to_doc
-----------
23.1.4.dev0
-----------

-------------------
23.1.4 (2024-01-04)
-------------------

No recorded changes since last release

-------------------
23.1.3 (2023-12-01)
Expand Down Expand Up @@ -37,6 +37,7 @@ Bug fixes
Bug fixes
=========

*
*
* Fix tags ownership by `@davelopez <https://github.com/davelopez>`_ in `#16339 <https://github.com/galaxyproject/galaxy/pull/16339>`_
* Push to object store even if ``set_meta`` fails by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16667 <https://github.com/galaxyproject/galaxy/pull/16667>`_
Expand Down Expand Up @@ -66,6 +67,7 @@ Enhancements
Bug fixes
=========

*
*
*
* Fix extra files path handling by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16541 <https://github.com/galaxyproject/galaxy/pull/16541>`_
Expand Down
2 changes: 1 addition & 1 deletion packages/job_execution/setup.cfg
Original file line number Diff line number Diff line change
Expand Up @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-job-execution
url = https://github.com/galaxyproject/galaxy
version = 23.1.4.dev0
version = 23.1.4

[options]
include_package_data = True
Expand Down
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