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@broadinstitute

Broad Institute

Broad Institute of MIT and Harvard

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  1. gatk gatk Public

    Official code repository for GATK versions 4 and up

    Java 1.7k 588

  2. picard picard Public

    A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

    Java 975 369

  3. cromwell cromwell Public

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    Scala 993 359

Repositories

Showing 10 of 1306 repositories
  • rcsb-saguaro Public Forked from rcsb/rcsb-saguaro

    1D Feature Viewer

    broadinstitute/rcsb-saguaro’s past year of commit activity
    TypeScript 0 MIT 12 0 3 Updated Oct 19, 2024
  • lrma-aou1-panel-creation Public

    Pipelines and evaluations covering integration, phasing, and imputation of short and structural variants for the AoU Phase 1 long-reads callset.

    broadinstitute/lrma-aou1-panel-creation’s past year of commit activity
    WDL 1 0 20 2 Updated Oct 19, 2024
  • thurloe Public

    A simple service to store arbitrary key/value pairs

    broadinstitute/thurloe’s past year of commit activity
    Scala 3 BSD-3-Clause 0 0 25 Updated Oct 19, 2024
  • hidive Public
    broadinstitute/hidive’s past year of commit activity
    Rust 0 BSD-3-Clause 0 3 2 Updated Oct 19, 2024
  • ddp-study-server Public

    Pepper Study Server

    broadinstitute/ddp-study-server’s past year of commit activity
    Java 8 BSD-3-Clause 5 1 4 Updated Oct 19, 2024
  • gatk Public

    Official code repository for GATK versions 4 and up

    broadinstitute/gatk’s past year of commit activity
    Java 1,688 588 1,214 (8 issues need help) 137 Updated Oct 19, 2024
  • CTAT-LRF-Paper Public
    broadinstitute/CTAT-LRF-Paper’s past year of commit activity
    Roc 1 0 0 0 Updated Oct 19, 2024
  • heimdall Public
    broadinstitute/heimdall’s past year of commit activity
    Shell 0 0 0 0 Updated Oct 19, 2024
  • depmap-portal Public

    Code for the DepMap portal at depmap.org

    broadinstitute/depmap-portal’s past year of commit activity
    Python 7 1 0 15 Updated Oct 18, 2024
  • rawls Public

    Rawls service for DSDE

    broadinstitute/rawls’s past year of commit activity
    Scala 26 BSD-3-Clause 4 0 11 Updated Oct 18, 2024
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