RAM-efficient Retrieval

[yasamanparhizkar]

PR Type

Feature

Short Description

Reduces RAM usage by the retrieval pipeline by:

• Creating large matrices in mmlearn/modules/metrics/retrieval_recall.py in batches instead of all at once.
• Using a single MetricCollection in mmlearn/tasks/zero_shot_retrieval.py for all modality-pairs to avoid duplicate tensors creations.
• Added a progress bar during the calculation of retrieval recall@k. The progress bar is appreciated because this calculation takes a considerable amount of time.

TODOs:

• This RAM efficiently might come at the cost of longer runtimes; more investigation is needed to ensure whether that's really the case.
• This code directly changes functions in retrieval_recall.py and zero_shot_retrieval.py without providing an option to use the previous implementation. This option needs to be added.

Tests Added

You can run retrieval by:

mmlearn_run 'hydra.searchpath=[pkg://projects.med_benchmarking.configs]' +experiment=baseline experiment_name=test_eval job_type=eval [email protected]=ROCO datasets.test.split=test +datasets/[email protected]_fn.batch_processors.text=HFCLIPTokenizer +datasets/[email protected]=med_clip_vision_transform datasets.test.transform.job_type=eval dataloader.test.batch_size=32 dataloader.test.num_workers=4

However, W&B does not log RAM usage during recall@k calculation. You need to manually add logging lines and compare RAM usage of this implementation vs. the previous one.