Skip to content

adding IO unit test #53

adding IO unit test

adding IO unit test #53

Workflow file for this run

name: io_gnu
on: [push, pull_request, workflow_dispatch]
# Cancel in-progress workflows when pushing to a branch
concurrency:
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
cancel-in-progress: true
env:
cache_key: gnu11-1
CC: gcc-10
FC: gfortran-10
CXX: g++-10
# Split into a steup step, and a WW3 build step which
# builds multiple switches in a matrix. The setup is run once and
# the environment is cached so each build of WW3 can share the dependencies.
jobs:
setup:
runs-on: ubuntu-latest
steps:
- name: checkout-ww3
if: steps.cache-env.outputs.cache-hit != 'true'
uses: actions/checkout@v3
with:
path: ww3
# Cache spack, OASIS, and compiler
# No way to flush Action cache, so key may have # appended
- name: cache-env
id: cache-env
uses: actions/cache@v3
with:
path: |
spack
~/.spack
work_oasis3-mct
key: spack-${{ runner.os }}-${{ env.cache_key }}-${{ hashFiles('ww3/model/ci/spack_gnu.yaml') }}
# Build WW3 spack environment
- name: install-dependencies-with-spack
if: steps.cache-env.outputs.cache-hit != 'true'
run: |
# Install NetCDF, ESMF, g2, etc using Spack
sudo apt install cmake
git clone -c feature.manyFiles=true https://github.com/JCSDA/spack.git
source spack/share/spack/setup-env.sh
spack env create ww3-gnu ww3/model/ci/spack_gnu.yaml
spack env activate ww3-gnu
spack compiler find
spack external find cmake
spack add [email protected]
spack concretize
spack install --dirty -v
- name: build-oasis
if: steps.cache-env.outputs.cache-hit != 'true'
run: |
source spack/share/spack/setup-env.sh
spack env activate ww3-gnu
export WWATCH3_DIR=${GITHUB_WORKSPACE}/ww3/model
export OASIS_INPUT_PATH=${GITHUB_WORKSPACE}/ww3/regtests/ww3_tp2.14/input/oasis3-mct
export OASIS_WORK_PATH=${GITHUB_WORKSPACE}/ww3/regtests/ww3_tp2.14/input/work_oasis3-mct
cd ww3/regtests/ww3_tp2.14/input/oasis3-mct/util/make_dir
cmake .
make VERBOSE=1
cp -r ${GITHUB_WORKSPACE}/ww3/regtests/ww3_tp2.14/input/work_oasis3-mct ${GITHUB_WORKSPACE}
io_gnu:
needs: setup
runs-on: ubuntu-latest
steps:
- name: install-dependencies
run: |
sudo apt-get update
sudo apt-get install doxygen gcovr valgrind
- name: checkout-ww3
uses: actions/checkout@v3
with:
path: ww3
- name: cache-env
id: cache-env
uses: actions/cache@v3
with:
path: |
spack
~/.spack
work_oasis3-mct
key: spack-${{ runner.os }}-${{ env.cache_key }}-${{ hashFiles('ww3/model/ci/spack_gnu.yaml') }}
- name: build-ww3
run: |
source spack/share/spack/setup-env.sh
spack env activate ww3-gnu
set -x
cd ww3
export CC=mpicc
export FC=mpif90
export OASISDIR=${GITHUB_WORKSPACE}/work_oasis3-mct
mkdir build && cd build
pwd
echo "${GITHUB_WORKSPACE}"
export LD_LIBRARY_PATH="/home/runner/work/WW3/WW3/spack/var/spack/environments/ww3-gnu/.spack-env/view/:$LD_LIBRARY_PATH"
which ncdump
cmake -DSWITCH=${GITHUB_WORKSPACE}/ww3/model/tests/data/switch.io -DCMAKE_BUILD_TYPE=Debug -DCMAKE_Fortran_FLAGS="-g -fprofile-abs-path -fprofile-arcs -ftest-coverage -O0 -Wall -fno-omit-frame-pointer -fsanitize=address" -DCMAKE_C_FLAGS="-g -fprofile-abs-path -fprofile-arcs -ftest-coverage -O0 -Wall -fno-omit-frame-pointer -fsanitize=address" ..
make -j2 VERBOSE=1
ctest --verbose --output-on-failure --rerun-failed
gcovr --root .. -v --html-details --exclude ../model/tests --exclude CMakeFiles --print-summary -o test-coverage.html &> /dev/null
- name: upload-test-coverage
uses: actions/upload-artifact@v3
with:
name: ww3-test-coverage
path: |
ww3/build/*.html
ww3/build/*.css