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Inference ONNX #367

Merged
merged 198 commits into from
Mar 20, 2024
Merged

Inference ONNX #367

merged 198 commits into from
Mar 20, 2024

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jamesgwen
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@jamesgwen jamesgwen commented Sep 5, 2023

Adding inference subpackage.

This subpackage will enable inference via ONNX models.

Tests are in the inference_tests folder.
A dummy ONNX CNN is in tests/testdata for the tests.

Updates to dependencies:

numpy==1.22.4 # orig = 1.19.5
pytest==7.4.0 # orig = 6.2.5
deepcell==0.12.7 # orig = 0.11.0
pandas==1.5.2 # orig no req

Includes changes to the readthedocs requirement file and how miniconda is installed. Detailed here #369

Dana-Farber and others added 30 commits December 16, 2022 11:07
Bumps [ipython](https://github.com/ipython/ipython) from 7.31.1 to 8.10.0.
- [Release notes](https://github.com/ipython/ipython/releases)
- [Commits](ipython/ipython@7.31.1...8.10.0)

---
updated-dependencies:
- dependency-name: ipython
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
…thon-8.10.0

Bump ipython from 7.31.1 to 8.10.0 in /docs
Add instructions for Google colab
Added new build, due to conflicts with urllib3 recent updates.
Update version
Updated Ubuntu OS
Changed ubuntu version to 22.04
Changed Ubuntu version
Update GitHub Actions workflow to use mamba for dependency management
Excluding python=3.9 to resolve the following issue is github action runs:

 Could not solve for environment specs
  The following packages are incompatible
  ├─ python 3.8  is requested and can be installed;
  └─ python 3.9**  is uninstallable because it conflicts with any installable versions previously reported.
Added python 3.9 to test the environment
Excluding python 3.8 as requirement
Excluded python version as dependency
VarunUllanat and others added 29 commits December 2, 2023 00:33
Updated skimage version for importing the graph module
Separately executed test cases for tilestitching functionality and other PathML modules.
@VarunUllanat VarunUllanat merged commit 44eca15 into dev Mar 20, 2024
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6 participants