diff --git a/docs/Installation_bioconda.md b/docs/Installation_bioconda.md index 049da78..7ec1e6d 100644 --- a/docs/Installation_bioconda.md +++ b/docs/Installation_bioconda.md @@ -1,22 +1,25 @@ --- layout: default -title: Bioconda (Not activated) +title: Bioconda nav_order: 4 description: "Just the Docs is a responsive Jekyll theme with built-in search that is easily customizable and hosted on GitHub Pages." parent: Installation --- -### Install SAIGE from bioconda (Not current version) +### Install SAIGE from bioconda -#### Warning: please do not use this bioconda version for bgen input. We are working on the issue. ![r-saige](https://anaconda.org/bioconda/r-saige/badges/version.svg) ![latest_update](https://anaconda.org/bioconda/r-saige/badges/latest_release_date.svg) -To install saige from conda simply create environment with latest version of R and saige: +Recent versions of SAIGE are distributed through bioconda with exclusively linux support. Mac OS support may be possible through other installation methods. + +To install saige from bioconda simply create environment with latest version of R and saige: ``` -conda create -n saige -c conda-forge -c bioconda "r-base>=4.0" r-saige +conda create -n saige -c conda-forge -c bioconda r-saige conda activate saige ``` +The installation will place the scripts in `extdata/` into your conda environment's PATH. + More info on [r-saige conda package](https://anaconda.org/bioconda/r-saige) and available versions can be found in the [issue #272](https://github.com/weizhouUMICH/SAIGE/issues/272).