Repositories list

• PhenotypeR

  Public
  R

  •

  Apache License 2.0

  •0•1•8•0•Updated Oct 18, 2024Oct 18, 2024

• OmopSketch

  Public
  R

  •

  Apache License 2.0

  •0•2•26•1•Updated Oct 18, 2024Oct 18, 2024

• drat

  Public
  drat repository for OHDSI R packages

  7•5•0•0•Updated Oct 18, 2024Oct 18, 2024

• FeatureExtraction

  Public
  An R package for generating features (covariates) for a cohort using data in the Common Data Model.

  hades

  R

  •58•60•41•7•Updated Oct 18, 2024Oct 18, 2024

• OhdsiShinyModules

  Public
  An R package containing Shiny modules used by various OHDSI Shiny apps

  R

  •11•8•52•4•Updated Oct 18, 2024Oct 18, 2024

• ShinyProxyDeploy

  Public
  Deploy OHDSI Shiny apps to results.ohdsi.org

  3•0•0•0•Updated Oct 18, 2024Oct 18, 2024

• TutorialDemo2024App

  Public
  Dockerfile

  •

  Apache License 2.0

  •0•0•0•0•Updated Oct 18, 2024Oct 18, 2024

• Ares

  Public
  A Research Exploration System

  Vue

  •

  Apache License 2.0

  •5•12•41•3•Updated Oct 18, 2024Oct 18, 2024

• Vocabulary-v5.0

  Public
  Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

  PLpgSQL

  •

  The Unlicense

  •75•219•216•20•Updated Oct 18, 2024Oct 18, 2024

• OmopViewer

  Public
  R

  •

  Apache License 2.0

  •0•1•21•1•Updated Oct 18, 2024Oct 18, 2024

• CohortConstructor

  Public
  R

  •

  Apache License 2.0

  •0•1•35•2•Updated Oct 18, 2024Oct 18, 2024

• ArachneExecutionEngine

  Public
  Arachne Execution Engine is a component used to execute remote SQL or R code. It is used by both Arachne Data Node as well as WebAPI

  PLpgSQL

  •8•8•2•1•Updated Oct 18, 2024Oct 18, 2024

• PatientLevelPrediction

  Public
  An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

  hades

  HTML

  •88•187•65•2•Updated Oct 18, 2024Oct 18, 2024

• Arachne

  Public
  Arachne Data Node web application

  TypeScript

  •

  Apache License 2.0

  •1•1•19•6•Updated Oct 18, 2024Oct 18, 2024

• ClinicalCharacteristics

  Public
  [under development] table shell approach to OMOP characterization

  R

  •

  Apache License 2.0

  •0•0•10•0•Updated Oct 17, 2024Oct 17, 2024

• circe-be

  Public
  CIRCE is a cohort definition and syntax compiler tool for OMOP CDMv5

  cohort-definitions

  Java

  •

  Apache License 2.0

  •13•9•8•5•Updated Oct 17, 2024Oct 17, 2024

• Themis

  Public
  Repository for OMOP CDM conventions as defined by THEMIS. These can be reference lists of concepts, pieces of standardized code for data generation or quality certification, and debates.

  Apache License 2.0

  •8•27•52•1•Updated Oct 17, 2024Oct 17, 2024

• ETL-LambdaBuilder

  Public
  CDM Builder leveraging AWS Lambda

  C#

  •

  Apache License 2.0

  •15•14•1•4•Updated Oct 17, 2024Oct 17, 2024

• Tutorial-ETL

  Public
  Course materials for OHDSI ETL tutorial

  Apache License 2.0

  •16•45•2•0•Updated Oct 16, 2024Oct 16, 2024

• CommonDataModel

  Public
  Definition and DDLs for the OMOP Common Data Model (CDM)

  HTML

  •450•882•87•12•Updated Oct 15, 2024Oct 15, 2024

• HealthSystems

  Public
  [Under development] Health Systems Interest Group

  PLpgSQL

  •

  Apache License 2.0

  •0•0•1•0•Updated Oct 15, 2024Oct 15, 2024

• omock

  Public
  R

  •

  Apache License 2.0

  •1•2•4•0•Updated Oct 15, 2024Oct 15, 2024

• ArachneUI

  Public
  Network infrastructure for collaborative studies across disparate data nodes and researches

  SCSS

  •6•14•1•6•Updated Oct 15, 2024Oct 15, 2024

• Atlas

  Public
  ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

  JavaScript

  •

  Apache License 2.0

  •136•269•215•16•Updated Oct 15, 2024Oct 15, 2024

• SqlRender

  Public
  This is an R package and Java library for rendering parameterized SQL, and translating it to different SQL dialects.

  hades

  R

  •

  Other

  •77•81•8•0•Updated Oct 14, 2024Oct 14, 2024

• ArachneUIComponents

  Public
  [under development] a open repository to host ARACHNE Common UI components

  JavaScript

  •

  Apache License 2.0

  •1•2•0•20•Updated Oct 14, 2024Oct 14, 2024

• webapi-component-geospatial

  Public
  Java

  •

  Apache License 2.0

  •0•1•3•8•Updated Oct 14, 2024Oct 14, 2024

• dbt-synthea

  Public
  [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM

  Python

  •

  Apache License 2.0

  •4•11•14•3•Updated Oct 13, 2024Oct 13, 2024

• Athena

  Public
  Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM

  Java

  •19•59•53•10•Updated Oct 13, 2024Oct 13, 2024

• ArachneCommons

  Public
  Commons module contains common code re-used between all Arachne components

  Java

  •8•3•1•9•Updated Oct 12, 2024Oct 12, 2024