From 5dccc48db79d0d33bcc61ecf5c701e4ab36e154c Mon Sep 17 00:00:00 2001 From: mvdbeek Date: Thu, 4 Jan 2024 16:15:11 +0100 Subject: [PATCH] Create version 23.1.4 --- lib/galaxy/version.py | 2 +- packages/app/HISTORY.rst | 25 ++++++++++++++++++++++--- packages/app/setup.cfg | 2 +- packages/auth/HISTORY.rst | 8 ++++---- packages/auth/setup.cfg | 2 +- packages/config/HISTORY.rst | 13 +++++++++---- packages/config/setup.cfg | 2 +- packages/data/HISTORY.rst | 23 ++++++++++++++++++++--- packages/data/setup.cfg | 2 +- packages/files/HISTORY.rst | 13 ++++++++++--- packages/files/setup.cfg | 2 +- packages/job_execution/HISTORY.rst | 10 ++++++---- packages/job_execution/setup.cfg | 2 +- packages/job_metrics/HISTORY.rst | 8 ++++---- packages/job_metrics/setup.cfg | 2 +- packages/navigation/HISTORY.rst | 8 ++++---- packages/navigation/setup.cfg | 2 +- packages/objectstore/HISTORY.rst | 9 +++++---- packages/objectstore/setup.cfg | 2 +- packages/selenium/HISTORY.rst | 10 ++++++---- packages/selenium/setup.cfg | 2 +- packages/test_api/HISTORY.rst | 16 +++++++++++++--- packages/test_api/setup.cfg | 2 +- packages/test_base/HISTORY.rst | 10 ++++++---- packages/test_base/setup.cfg | 2 +- packages/test_driver/HISTORY.rst | 9 +++++---- packages/test_driver/setup.cfg | 2 +- packages/tool_util/HISTORY.rst | 20 +++++++++++++++++--- packages/tool_util/setup.cfg | 2 +- packages/tours/HISTORY.rst | 8 ++++---- packages/tours/setup.cfg | 2 +- packages/util/HISTORY.rst | 10 ++++++---- packages/util/setup.cfg | 2 +- packages/web_apps/HISTORY.rst | 20 +++++++++++++++++--- packages/web_apps/setup.cfg | 2 +- packages/web_framework/HISTORY.rst | 13 +++++++++---- packages/web_framework/setup.cfg | 2 +- packages/web_stack/HISTORY.rst | 9 +++++---- packages/web_stack/setup.cfg | 2 +- 39 files changed, 192 insertions(+), 90 deletions(-) diff --git a/lib/galaxy/version.py b/lib/galaxy/version.py index 4017c73a456b..a6e02e6e80d8 100644 --- a/lib/galaxy/version.py +++ b/lib/galaxy/version.py @@ -1,3 +1,3 @@ VERSION_MAJOR = "23.1" -VERSION_MINOR = "4.dev0" +VERSION_MINOR = "4" VERSION = VERSION_MAJOR + (f".{VERSION_MINOR}" if VERSION_MINOR else "") diff --git a/packages/app/HISTORY.rst b/packages/app/HISTORY.rst index e0ad180b614c..74f0efbee7ef 100644 --- a/packages/app/HISTORY.rst +++ b/packages/app/HISTORY.rst @@ -3,11 +3,17 @@ History .. to_doc ------------ -23.1.4.dev0 ------------ +------------------- +23.1.4 (2024-01-04) +------------------- + +========= +Bug fixes +========= +* Fix workflow index total matches counting by `@davelopez `_ in `#17176 `_ +* Fix `url_for` in tool error reports by `@davelopez `_ in `#17210 `_ ------------------- 23.1.3 (2023-12-01) @@ -48,6 +54,7 @@ Enhancements Bug fixes ========= +* * * read job_conf directly from `config_dir` instead of computing it again from `config_file` by `@bernt-matthias `_ in `#15596 `_ * Fix some drs handling issues by `@nuwang `_ in `#15777 `_ @@ -104,6 +111,7 @@ Bug fixes Enhancements ============ +* * * Empower Users to Select Storage Destination by `@jmchilton `_ in `#14073 `_ * External Login Flow: Redirect users if account already exists by `@ahmedhamidawan `_ in `#15019 `_ @@ -190,6 +198,7 @@ Other changes Bug fixes ========= +* * * * Fix upload paramfile handling (for real user setups) by `@bernt-matthias `_ in `#16504 `_ @@ -205,6 +214,7 @@ Bug fixes Enhancements ============ +* * * * Update pulsar client library to 0.15.5 by `@mvdbeek `_ in `#16701 `_ @@ -221,6 +231,7 @@ Bug fixes * * * +* * Skip installing npm/yarn if available, fix conditional dependency parsing, create virtualenv via conda when conda active by `@bernt-matthias `_ in `#16403 `_ * Fix test discovery in vscode by `@mvdbeek `_ in `#16413 `_ * Fixes for (gitlab) error reporting by `@bernt-matthias `_ in `#16424 `_ @@ -238,6 +249,7 @@ Bug fixes * * * +* * Fix default when statement evaluation by `@mvdbeek `_ in `#16332 `_ * Redact private role name and description when purging user by `@mvdbeek `_ in `#16349 `_ @@ -255,6 +267,7 @@ Bug fixes * * * +* * Bump galaxy-release-util version to 0.1.2 by `@mvdbeek `_ in `#16241 `_ ============ @@ -264,12 +277,14 @@ Enhancements * * * +* * When importing tool data bundles, use the first loc file for the matching table by `@natefoo `_ in `#16247 `_ ============= Other changes ============= +* * * * Forward port of slugify username received from oidc by `@nuwang `_ in `#16271 `_ @@ -289,6 +304,7 @@ Bug fixes * * * +* * Fix ``Text File Busy`` errors at the source by `@mvdbeek `_ in `#16212 `_ ============ @@ -301,6 +317,7 @@ Enhancements * * * +* * Point release deps fixes and docs by `@mvdbeek `_ in `#16214 `_ * Use galaxy-release-util to upload python packages by `@mvdbeek `_ in `#16240 `_ @@ -320,6 +337,7 @@ Bug fixes * * * +* * Display DCE in job parameter component, allow rerunning with DCE input by `@mvdbeek `_ in `#15744 `_ * Fix mixed outputs_to_working_directory pulsar destinations by `@mvdbeek `_ in `#15927 `_ * Update Gravity to 1.0.3 by `@natefoo `_ in `#15939 `_ @@ -349,6 +367,7 @@ Other changes * * * +* * Startup fix when tool removed between reboot by `@mvdbeek `_ in `#16175 `_ ------------------- diff --git a/packages/app/setup.cfg b/packages/app/setup.cfg index 0460161f32c4..a0f08b0910e0 100644 --- a/packages/app/setup.cfg +++ b/packages/app/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-app url = https://github.com/galaxyproject/galaxy -version = 23.1.4.dev0 +version = 23.1.4 [options] include_package_data = True diff --git a/packages/auth/HISTORY.rst b/packages/auth/HISTORY.rst index e9df2d59be20..752198b9573d 100644 --- a/packages/auth/HISTORY.rst +++ b/packages/auth/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -23.1.4.dev0 ------------ - +------------------- +23.1.4 (2024-01-04) +------------------- +No recorded changes since last release ------------------- 23.1.3 (2023-12-01) diff --git a/packages/auth/setup.cfg b/packages/auth/setup.cfg index e6ceed32821b..66a974a1362a 100644 --- a/packages/auth/setup.cfg +++ b/packages/auth/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-auth url = https://github.com/galaxyproject/galaxy -version = 23.1.4.dev0 +version = 23.1.4 [options] include_package_data = True diff --git a/packages/config/HISTORY.rst b/packages/config/HISTORY.rst index dace0fb6db6d..6f3ed8ba89b0 100644 --- a/packages/config/HISTORY.rst +++ b/packages/config/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -23.1.4.dev0 ------------ - +------------------- +23.1.4 (2024-01-04) +------------------- +No recorded changes since last release ------------------- 23.1.3 (2023-12-01) @@ -42,6 +42,7 @@ Enhancements Bug fixes ========= +* * * Fix some drs handling issues by `@nuwang `_ in `#15777 `_ * Improve container resolver documentation by `@mvdbeek `_ in `#16280 `_ @@ -53,6 +54,7 @@ Bug fixes Enhancements ============ +* * * External Login Flow: Redirect users if account already exists by `@ahmedhamidawan `_ in `#15019 `_ * Add slack error reporting plugin by `@hexylena `_ in `#15025 `_ @@ -97,6 +99,7 @@ No recorded changes since last release Bug fixes ========= +* * * * Minor bug fix for default mail templates by `@neoformit `_ in `#16362 `_ @@ -132,12 +135,14 @@ Bug fixes * * * +* * Change default watchdog inotify_buffer log level to info by `@mvdbeek `_ in `#15967 `_ ============ Enhancements ============ +* * * * Add ``ca_certs`` option for sentry client by `@mvdbeek `_ in `#15943 `_ diff --git a/packages/config/setup.cfg b/packages/config/setup.cfg index 56d72069aa37..fc5c7bb25387 100644 --- a/packages/config/setup.cfg +++ b/packages/config/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-config url = https://github.com/galaxyproject/galaxy -version = 23.1.4.dev0 +version = 23.1.4 [options] include_package_data = True diff --git a/packages/data/HISTORY.rst b/packages/data/HISTORY.rst index 9a3d35bd0a51..82784e2fd404 100644 --- a/packages/data/HISTORY.rst +++ b/packages/data/HISTORY.rst @@ -3,11 +3,22 @@ History .. to_doc ------------ -23.1.4.dev0 ------------ +------------------- +23.1.4 (2024-01-04) +------------------- +========= +Bug fixes +========= + +* Fix User.current_galaxy_session by `@mvdbeek `_ in `#17232 `_ + +============= +Other changes +============= + +* Backport #17188: Fix for converter tests by `@mvdbeek `_ in `#17231 `_ ------------------- 23.1.3 (2023-12-01) @@ -29,6 +40,7 @@ Bug fixes Bug fixes ========= +* * Skip change_datatype things if we're not actually changing the extension by `@mvdbeek `_ in `#16931 `_ * Fix copying metadata to copied job outputs by `@mvdbeek `_ in `#17007 `_ * Update tar_to_directory dependency by `@mvdbeek `_ in `#17009 `_ @@ -52,6 +64,7 @@ Enhancements Bug fixes ========= +* * * Fix bad auto-merge of dev. by `@jmchilton `_ in `#15386 `_ * Merge conflicting db migration branches into one by `@jdavcs `_ in `#15771 `_ @@ -83,6 +96,7 @@ Bug fixes Enhancements ============ +* * * Empower Users to Select Storage Destination by `@jmchilton `_ in `#14073 `_ * Add Storage Dashboard visualizations for histories by `@davelopez `_ in `#14820 `_ @@ -142,6 +156,7 @@ Other changes Bug fixes ========= +* * * * Fix extra files path handling by `@mvdbeek `_ in `#16541 `_ @@ -159,6 +174,7 @@ Bug fixes * * * +* * Copy when_expression when copying workflow step by `@mvdbeek `_ in `#16377 `_ ------------------- @@ -192,6 +208,7 @@ Bug fixes * * * +* * Display DCE in job parameter component, allow rerunning with DCE input by `@mvdbeek `_ in `#15744 `_ * Fix folder listing via file browser by `@mvdbeek `_ in `#15950 `_ * Fix RO-crate invocation export with complex collections by `@davelopez `_ in `#15971 `_ diff --git a/packages/data/setup.cfg b/packages/data/setup.cfg index 01b79830bfc6..e9838afb3014 100644 --- a/packages/data/setup.cfg +++ b/packages/data/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-data url = https://github.com/galaxyproject/galaxy -version = 23.1.4.dev0 +version = 23.1.4 [options] include_package_data = True diff --git a/packages/files/HISTORY.rst b/packages/files/HISTORY.rst index fbcdea5fd74a..bf0daee404f3 100644 --- a/packages/files/HISTORY.rst +++ b/packages/files/HISTORY.rst @@ -3,11 +3,16 @@ History .. to_doc ------------ -23.1.4.dev0 ------------ +------------------- +23.1.4 (2024-01-04) +------------------- +========= +Bug fixes +========= + +* Separate collection and non-collection data element by `@mvdbeek `_ in `#17236 `_ ------------------- 23.1.3 (2023-12-01) @@ -35,6 +40,7 @@ Bug fixes Bug fixes ========= +* * * Fix some drs handling issues by `@nuwang `_ in `#15777 `_ * Fix filesource file url support by `@nuwang `_ in `#15794 `_ @@ -80,6 +86,7 @@ No recorded changes since last release Bug fixes ========= +* * * * Fix dropbox import to support newer versions by `@nuwang `_ in `#16239 `_ diff --git a/packages/files/setup.cfg b/packages/files/setup.cfg index 4ad789e0230c..05ecf037b6b8 100644 --- a/packages/files/setup.cfg +++ b/packages/files/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-files url = https://github.com/galaxyproject/galaxy -version = 23.1.4.dev0 +version = 23.1.4 [options] include_package_data = True diff --git a/packages/job_execution/HISTORY.rst b/packages/job_execution/HISTORY.rst index e8ca1556a680..2be19b75e9a1 100644 --- a/packages/job_execution/HISTORY.rst +++ b/packages/job_execution/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -23.1.4.dev0 ------------ - +------------------- +23.1.4 (2024-01-04) +------------------- +No recorded changes since last release ------------------- 23.1.3 (2023-12-01) @@ -37,6 +37,7 @@ Bug fixes Bug fixes ========= +* * * Fix tags ownership by `@davelopez `_ in `#16339 `_ * Push to object store even if ``set_meta`` fails by `@mvdbeek `_ in `#16667 `_ @@ -66,6 +67,7 @@ Enhancements Bug fixes ========= +* * * * Fix extra files path handling by `@mvdbeek `_ in `#16541 `_ diff --git a/packages/job_execution/setup.cfg b/packages/job_execution/setup.cfg index b8e2fd57759e..9e66503a53a2 100644 --- a/packages/job_execution/setup.cfg +++ b/packages/job_execution/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-job-execution url = https://github.com/galaxyproject/galaxy -version = 23.1.4.dev0 +version = 23.1.4 [options] include_package_data = True diff --git a/packages/job_metrics/HISTORY.rst b/packages/job_metrics/HISTORY.rst index 6b079f657ec0..d0693eca6e86 100644 --- a/packages/job_metrics/HISTORY.rst +++ b/packages/job_metrics/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -23.1.4.dev0 ------------ - +------------------- +23.1.4 (2024-01-04) +------------------- +No recorded changes since last release ------------------- 23.1.3 (2023-12-01) diff --git a/packages/job_metrics/setup.cfg b/packages/job_metrics/setup.cfg index da862a923f13..dd2539475412 100644 --- a/packages/job_metrics/setup.cfg +++ b/packages/job_metrics/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-job-metrics url = https://github.com/galaxyproject/galaxy -version = 23.1.4.dev0 +version = 23.1.4 [options] include_package_data = True diff --git a/packages/navigation/HISTORY.rst b/packages/navigation/HISTORY.rst index d88cce9e72db..4efb46460305 100644 --- a/packages/navigation/HISTORY.rst +++ b/packages/navigation/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -23.1.4.dev0 ------------ - +------------------- +23.1.4 (2024-01-04) +------------------- +No recorded changes since last release ------------------- 23.1.3 (2023-12-01) diff --git a/packages/navigation/setup.cfg b/packages/navigation/setup.cfg index a953df772595..0b8fc3d80ba6 100644 --- a/packages/navigation/setup.cfg +++ b/packages/navigation/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-navigation url = https://github.com/galaxyproject/galaxy -version = 23.1.4.dev0 +version = 23.1.4 [options] include_package_data = True diff --git a/packages/objectstore/HISTORY.rst b/packages/objectstore/HISTORY.rst index 7215d7288a0e..987227d4c333 100644 --- a/packages/objectstore/HISTORY.rst +++ b/packages/objectstore/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -23.1.4.dev0 ------------ - +------------------- +23.1.4 (2024-01-04) +------------------- +No recorded changes since last release ------------------- 23.1.3 (2023-12-01) @@ -61,6 +61,7 @@ Other changes Bug fixes ========= +* * * * Fix extra files path handling by `@mvdbeek `_ in `#16541 `_ diff --git a/packages/objectstore/setup.cfg b/packages/objectstore/setup.cfg index 4311924589e9..326cc672925d 100644 --- a/packages/objectstore/setup.cfg +++ b/packages/objectstore/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-objectstore url = https://github.com/galaxyproject/galaxy -version = 23.1.4.dev0 +version = 23.1.4 [options] include_package_data = True diff --git a/packages/selenium/HISTORY.rst b/packages/selenium/HISTORY.rst index df98cb7ef65a..b52483b6b68c 100644 --- a/packages/selenium/HISTORY.rst +++ b/packages/selenium/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -23.1.4.dev0 ------------ - +------------------- +23.1.4 (2024-01-04) +------------------- +No recorded changes since last release ------------------- 23.1.3 (2023-12-01) @@ -86,6 +86,7 @@ No recorded changes since last release Enhancements ============ +* * * * Port selenium setup to non-deprecated selenium options by `@mvdbeek `_ in `#16215 `_ @@ -106,6 +107,7 @@ Enhancements * * * +* * Add support for launching workflows via Tutorial Mode by `@hexylena `_ in `#15684 `_ ------------------- diff --git a/packages/selenium/setup.cfg b/packages/selenium/setup.cfg index 8aa14e4a068e..7b75add11ec3 100644 --- a/packages/selenium/setup.cfg +++ b/packages/selenium/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-selenium url = https://github.com/galaxyproject/galaxy -version = 23.1.4.dev0 +version = 23.1.4 [options] include_package_data = True diff --git a/packages/test_api/HISTORY.rst b/packages/test_api/HISTORY.rst index e106a08f0a48..6e25f0bb67dc 100644 --- a/packages/test_api/HISTORY.rst +++ b/packages/test_api/HISTORY.rst @@ -3,11 +3,17 @@ History .. to_doc ------------ -23.1.4.dev0 ------------ +------------------- +23.1.4 (2024-01-04) +------------------- + +========= +Bug fixes +========= +* Assert that tus uploader instance has URL by `@mvdbeek `_ in `#17133 `_ +* Fix workflow index total matches counting by `@davelopez `_ in `#17176 `_ ------------------- 23.1.3 (2023-12-01) @@ -42,6 +48,7 @@ Enhancements Bug fixes ========= +* * * Ensure session is request-scoped for legacy endpoints by `@jdavcs `_ in `#16207 `_ * allow anon access for api/datasets/get_content_as_text by `@martenson `_ in `#16226 `_ @@ -64,6 +71,7 @@ Bug fixes Enhancements ============ +* * * Empower Users to Select Storage Destination by `@jmchilton `_ in `#14073 `_ * Outline Deployment Tests by `@jmchilton `_ in `#15420 `_ @@ -117,6 +125,7 @@ No recorded changes since last release Bug fixes ========= +* * * * Display DCE in job parameter component, allow rerunning with DCE input by `@mvdbeek `_ in `#15744 `_ @@ -129,6 +138,7 @@ Bug fixes Enhancements ============ +* * * * Add support for launching workflows via Tutorial Mode by `@hexylena `_ in `#15684 `_ diff --git a/packages/test_api/setup.cfg b/packages/test_api/setup.cfg index 7c2b02bf368b..1c1b71c107d9 100644 --- a/packages/test_api/setup.cfg +++ b/packages/test_api/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-api url = https://github.com/galaxyproject/galaxy -version = 23.1.4.dev0 +version = 23.1.4 [options] include_package_data = True diff --git a/packages/test_base/HISTORY.rst b/packages/test_base/HISTORY.rst index 7185b060572d..ded0ff53f2d8 100644 --- a/packages/test_base/HISTORY.rst +++ b/packages/test_base/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -23.1.4.dev0 ------------ - +------------------- +23.1.4 (2024-01-04) +------------------- +No recorded changes since last release ------------------- 23.1.3 (2023-12-01) @@ -35,6 +35,7 @@ Bug fixes Bug fixes ========= +* * * Ensure session is request-scoped for legacy endpoints by `@jdavcs `_ in `#16207 `_ @@ -96,6 +97,7 @@ No recorded changes since last release Bug fixes ========= +* * * * Ensure history export contains all expected datasets by `@davelopez `_ in `#16013 `_ diff --git a/packages/test_base/setup.cfg b/packages/test_base/setup.cfg index 9288351b1e2b..1ae38d156611 100644 --- a/packages/test_base/setup.cfg +++ b/packages/test_base/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-base url = https://github.com/galaxyproject/galaxy -version = 23.1.4.dev0 +version = 23.1.4 [options] include_package_data = True diff --git a/packages/test_driver/HISTORY.rst b/packages/test_driver/HISTORY.rst index 641f96d6a95a..d82f598f3b0f 100644 --- a/packages/test_driver/HISTORY.rst +++ b/packages/test_driver/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -23.1.4.dev0 ------------ - +------------------- +23.1.4 (2024-01-04) +------------------- +No recorded changes since last release ------------------- 23.1.3 (2023-12-01) @@ -35,6 +35,7 @@ Bug fixes Bug fixes ========= +* * * Backport tool mem fixes by `@mvdbeek `_ in `#16601 `_ * Fix allowlist deserialization in file sources by `@mvdbeek `_ in `#16729 `_ diff --git a/packages/test_driver/setup.cfg b/packages/test_driver/setup.cfg index 750daed6d46c..445c902e75b2 100644 --- a/packages/test_driver/setup.cfg +++ b/packages/test_driver/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-driver url = https://github.com/galaxyproject/galaxy -version = 23.1.4.dev0 +version = 23.1.4 [options] include_package_data = True diff --git a/packages/tool_util/HISTORY.rst b/packages/tool_util/HISTORY.rst index 2c611559436c..9e999f195ca1 100644 --- a/packages/tool_util/HISTORY.rst +++ b/packages/tool_util/HISTORY.rst @@ -3,11 +3,16 @@ History .. to_doc ------------ -23.1.4.dev0 ------------ +------------------- +23.1.4 (2024-01-04) +------------------- +========= +Bug fixes +========= + +* Separate collection and non-collection data element by `@mvdbeek `_ in `#17236 `_ ------------------- 23.1.3 (2023-12-01) @@ -43,6 +48,7 @@ Enhancements Bug fixes ========= +* * * Fixes for two framework test tools by `@bernt-matthias `_ in `#15483 `_ * add missing f for f-string by `@bernt-matthias `_ in `#15584 `_ @@ -65,6 +71,7 @@ Bug fixes Enhancements ============ +* * * Decompress history data for testing assertions by `@bernt-matthias `_ in `#15085 `_ * OIDC tokens by `@SergeyYakubov `_ in `#15300 `_ @@ -102,6 +109,7 @@ Other changes Bug fixes ========= +* * * * Fixes for extra files handling and cached object stores by `@mvdbeek `_ in `#16595 `_ @@ -119,6 +127,7 @@ Bug fixes * * * +* * Allow duplicate labels in linter if outputs contain filters by `@bernt-matthias `_ in `#15933 `_ * Fix parsing tool metadata from bio.tools by `@kysrpex `_ in `#16449 `_ * Linter: fix regex for profile version by `@bernt-matthias `_ in `#16480 `_ @@ -143,6 +152,7 @@ Bug fixes * * * +* * xsd: add missing `sep` attribute for `has_n_columns` by `@bernt-matthias `_ in `#16262 `_ * Missing init prevents models.py being bundled into tool_util by `@nuwang `_ in `#16308 `_ @@ -150,6 +160,7 @@ Bug fixes Enhancements ============ +* * * * When importing tool data bundles, use the first loc file for the matching table by `@natefoo `_ in `#16247 `_ @@ -169,6 +180,7 @@ Bug fixes * * * +* * Don't fail CWL tool parsing when Cheetah not installed by `@mvdbeek `_ in `#16219 `_ * Allow skipping ``expect_num_outputs`` when ``expect_failure`` is set in tool test by `@bernt-matthias `_ in `#16237 `_ @@ -188,6 +200,7 @@ Bug fixes * * * +* * Fix assertion linting to not fail on byte suffixes by `@bernt-matthias `_ in `#15873 `_ * Fix ``get_test_from_anaconda()`` and ``base_image_for_targets()`` functions by `@nsoranzo `_ in `#16125 `_ * Fix test search for mulled container hashes by `@mvdbeek `_ in `#16170 `_ @@ -202,6 +215,7 @@ Enhancements * * * +* * Allow setting auto_decompress property in staging interface by `@mvdbeek `_ in `#16014 `_ ------------------- diff --git a/packages/tool_util/setup.cfg b/packages/tool_util/setup.cfg index acdcffdecc2c..c52a07062e91 100644 --- a/packages/tool_util/setup.cfg +++ b/packages/tool_util/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tool-util url = https://github.com/galaxyproject/galaxy -version = 23.1.4.dev0 +version = 23.1.4 [options] include_package_data = True diff --git a/packages/tours/HISTORY.rst b/packages/tours/HISTORY.rst index ce66d14e3a1b..a64ed17f6db4 100644 --- a/packages/tours/HISTORY.rst +++ b/packages/tours/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -23.1.4.dev0 ------------ - +------------------- +23.1.4 (2024-01-04) +------------------- +No recorded changes since last release ------------------- 23.1.3 (2023-12-01) diff --git a/packages/tours/setup.cfg b/packages/tours/setup.cfg index 9e043d5090f2..e50fd78aa1cf 100644 --- a/packages/tours/setup.cfg +++ b/packages/tours/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tours url = https://github.com/galaxyproject/galaxy -version = 23.1.4.dev0 +version = 23.1.4 [options] include_package_data = True diff --git a/packages/util/HISTORY.rst b/packages/util/HISTORY.rst index 6b2bcd3b1b28..9351af707925 100644 --- a/packages/util/HISTORY.rst +++ b/packages/util/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -23.1.4.dev0 ------------ - +------------------- +23.1.4 (2024-01-04) +------------------- +No recorded changes since last release ------------------- 23.1.3 (2023-12-01) @@ -49,6 +49,7 @@ Bug fixes Enhancements ============ +* * * Various Tool Shed Cleanup by `@jmchilton `_ in `#15247 `_ * Protection against problematic boolean parameters. by `@jmchilton `_ in `#15493 `_ @@ -101,6 +102,7 @@ No recorded changes since last release Bug fixes ========= +* * * * Replace httpbin service with pytest-httpserver by `@mvdbeek `_ in `#16042 `_ diff --git a/packages/util/setup.cfg b/packages/util/setup.cfg index 2c7308921e3f..bee1df9ed623 100644 --- a/packages/util/setup.cfg +++ b/packages/util/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-util url = https://github.com/galaxyproject/galaxy -version = 23.1.4.dev0 +version = 23.1.4 [options] include_package_data = True diff --git a/packages/web_apps/HISTORY.rst b/packages/web_apps/HISTORY.rst index f2d98aeff0e3..a633d99c02ef 100644 --- a/packages/web_apps/HISTORY.rst +++ b/packages/web_apps/HISTORY.rst @@ -3,11 +3,16 @@ History .. to_doc ------------ -23.1.4.dev0 ------------ +------------------- +23.1.4 (2024-01-04) +------------------- +========= +Bug fixes +========= + +* Properly clear session on OIDC logout by `@guerler `_ in `#17120 `_ ------------------- 23.1.3 (2023-12-01) @@ -29,6 +34,7 @@ Bug fixes Bug fixes ========= +* * Provide error message instead of internal server error by `@mvdbeek `_ in `#16905 `_ * Fix input dates in notifications: consider timezone offset by `@davelopez `_ in `#17088 `_ @@ -47,6 +53,7 @@ Enhancements Bug fixes ========= +* * * Create ToolSuccess route and refactor component by `@ahmedhamidawan `_ in `#15484 `_ * fix premature return in user API by `@martenson `_ in `#15781 `_ @@ -68,6 +75,7 @@ Bug fixes Enhancements ============ +* * * Empower Users to Select Storage Destination by `@jmchilton `_ in `#14073 `_ * Add Storage Dashboard visualizations for histories by `@davelopez `_ in `#14820 `_ @@ -126,6 +134,7 @@ Other changes Bug fixes ========= +* * * * Fix incorrect ASGI request host by `@davelopez `_ in `#16574 `_ @@ -143,6 +152,7 @@ Bug fixes * * * +* * Fix active step display in workflow editor side panel by `@mvdbeek `_ in `#16364 `_ ------------------- @@ -158,6 +168,7 @@ Bug fixes * * * +* * Fix folder access for anonymous user by `@mvdbeek `_ in `#16330 `_ ------------------- @@ -174,12 +185,14 @@ Bug fixes * * * +* * Fix converting Enum value to str for Python 3.11 by `@nsoranzo `_ in `#16284 `_ ============ Enhancements ============ +* * * * When importing tool data bundles, use the first loc file for the matching table by `@natefoo `_ in `#16247 `_ @@ -205,6 +218,7 @@ Bug fixes * * * +* * Display DCE in job parameter component, allow rerunning with DCE input by `@mvdbeek `_ in `#15744 `_ * Various fixes to path prefix handling by `@mvdbeek `_ in `#16033 `_ * Fix dataype_change not updating HDCA update_time by `@mvdbeek `_ in `#16099 `_ diff --git a/packages/web_apps/setup.cfg b/packages/web_apps/setup.cfg index 879df863e617..5dc186e8ed7b 100644 --- a/packages/web_apps/setup.cfg +++ b/packages/web_apps/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-apps url = https://github.com/galaxyproject/galaxy -version = 23.1.4.dev0 +version = 23.1.4 [options] include_package_data = True diff --git a/packages/web_framework/HISTORY.rst b/packages/web_framework/HISTORY.rst index dc7544fa7601..7ab3516936d0 100644 --- a/packages/web_framework/HISTORY.rst +++ b/packages/web_framework/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -23.1.4.dev0 ------------ - +------------------- +23.1.4 (2024-01-04) +------------------- +No recorded changes since last release ------------------- 23.1.3 (2023-12-01) @@ -41,6 +41,7 @@ Enhancements Bug fixes ========= +* * * Fix some drs handling issues by `@nuwang `_ in `#15777 `_ * Ensure session is request-scoped for legacy endpoints by `@jdavcs `_ in `#16207 `_ @@ -49,6 +50,7 @@ Bug fixes Enhancements ============ +* * * Update Python dependencies by `@galaxybot `_ in `#15435 `_ * Don't error on missing parameters or unused parameters in UI controllers by `@mvdbeek `_ in `#16246 `_ @@ -62,6 +64,7 @@ Enhancements Bug fixes ========= +* * * * Don't read request body into memory by `@mvdbeek `_ in `#16585 `_ @@ -78,6 +81,7 @@ Bug fixes * * * +* * Media player fix issue 16415 by `@bdwheele `_ in `#16443 `_ * Fix static file serving for ``robots.txt`` and ``favicon.ico`` when using per_host settings by `@mira-miracoli `_ in `#16459 `_ @@ -112,6 +116,7 @@ Bug fixes * * * +* * Various fixes to path prefix handling by `@mvdbeek `_ in `#16033 `_ ------------------- diff --git a/packages/web_framework/setup.cfg b/packages/web_framework/setup.cfg index ef666f627b00..d5c984182d8a 100644 --- a/packages/web_framework/setup.cfg +++ b/packages/web_framework/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-framework url = https://github.com/galaxyproject/galaxy -version = 23.1.4.dev0 +version = 23.1.4 [options] include_package_data = True diff --git a/packages/web_stack/HISTORY.rst b/packages/web_stack/HISTORY.rst index d9df2f526963..914b984dd2f7 100644 --- a/packages/web_stack/HISTORY.rst +++ b/packages/web_stack/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -23.1.4.dev0 ------------ - +------------------- +23.1.4 (2024-01-04) +------------------- +No recorded changes since last release ------------------- 23.1.3 (2023-12-01) @@ -61,6 +61,7 @@ No recorded changes since last release Bug fixes ========= +* * * * Don't attempt to call a bool when using mem-self handler assignment. by `@natefoo `_ in `#16359 `_ diff --git a/packages/web_stack/setup.cfg b/packages/web_stack/setup.cfg index dba9e9750c5a..10c7231e953e 100644 --- a/packages/web_stack/setup.cfg +++ b/packages/web_stack/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-stack url = https://github.com/galaxyproject/galaxy -version = 23.1.4.dev0 +version = 23.1.4 [options] include_package_data = True